3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CUUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAAG
Length
43 nucleotides
Bulged bases
5VPP|1|RA|U|2076, 5VPP|1|RA|U|2390, 5VPP|1|RA|G|2428, 5VPP|1|RA|A|2430, 5VPP|1|RA|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5VPP|1|RA|C|2073
5VPP|1|RA|U|2074
5VPP|1|RA|U|2075
5VPP|1|RA|U|2076
5VPP|1|RA|A|2077
*
5VPP|1|RA|U|2243
5VPP|1|RA|U|2244
5VPP|1|RA|U|2245
5VPP|1|RA|G|2246
*
5VPP|1|RA|C|2258
5VPP|1|RA|G|2259
*
5VPP|1|RA|C|2281
5VPP|1|RA|G|2282
5VPP|1|RA|C|2283
5VPP|1|RA|C|2284
*
5VPP|1|RA|G|2384
5VPP|1|RA|C|2385
5VPP|1|RA|C|2386
5VPP|1|RA|U|2387
5VPP|1|RA|A|2388
5VPP|1|RA|G|2389
5VPP|1|RA|U|2390
5VPP|1|RA|G|2391
5VPP|1|RA|A|2392
5VPP|1|RA|A|2393
5VPP|1|RA|C|2394
5VPP|1|RA|C|2395
*
5VPP|1|RA|G|2421
5VPP|1|RA|A|2422
5VPP|1|RA|U|2423
5VPP|1|RA|C|2424
5VPP|1|RA|A|2425
5VPP|1|RA|A|2426
5VPP|1|RA|C|2427
5VPP|1|RA|G|2428
5VPP|1|RA|G|2429
5VPP|1|RA|A|2430
5VPP|1|RA|U|2431
5VPP|1|RA|A|2432
5VPP|1|RA|A|2433
5VPP|1|RA|A|2434
5VPP|1|RA|A|2435
5VPP|1|RA|G|2436

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QV
Transfer RNA; tRNA
Chain R0
50S ribosomal protein L27
Chain R1
50S ribosomal protein L28
Chain R6
50S ribosomal protein L33
Chain R8
50S ribosomal protein L35
Chain RD
50S ribosomal protein L2
Chain RP
50S ribosomal protein L15

Coloring options:

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