J6_5W4K_003

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5W4K|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5W4K|1|2A|G|44
5W4K|1|2A|C|45
*
5W4K|1|2A|G|179
5W4K|1|2A|G|180
5W4K|1|2A|A|181
5W4K|1|2A|A|182
5W4K|1|2A|C|183
*
5W4K|1|2A|G|214
5W4K|1|2A|G|215
5W4K|1|2A|A|216
5W4K|1|2A|G|217
5W4K|1|2A|A|218
5W4K|1|2A|G|219
5W4K|1|2A|G|220
5W4K|1|2A|A|221
5W4K|1|2A|A|222
5W4K|1|2A|A|223
5W4K|1|2A|G|224
*
5W4K|1|2A|C|231
5W4K|1|2A|G|232
5W4K|1|2A|A|233
5W4K|1|2A|C|234
5W4K|1|2A|U|235
*
5W4K|1|2A|A|262
5W4K|1|2A|C|263
5W4K|1|2A|C|264
5W4K|1|2A|A|265
5W4K|1|2A|G|266
*
5W4K|1|2A|C|426
5W4K|1|2A|U|427
5W4K|1|2A|A|428
5W4K|1|2A|A|429
5W4K|1|2A|G|430
5W4K|1|2A|U|431
5W4K|1|2A|A|432
5W4K|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34