J6_5WIT_003

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5WIT|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIT|1|2A|G|44
5WIT|1|2A|C|45
*
5WIT|1|2A|G|179
5WIT|1|2A|G|180
5WIT|1|2A|A|181
5WIT|1|2A|A|182
5WIT|1|2A|C|183
*
5WIT|1|2A|G|214
5WIT|1|2A|G|215
5WIT|1|2A|A|216
5WIT|1|2A|G|217
5WIT|1|2A|A|218
5WIT|1|2A|G|219
5WIT|1|2A|G|220
5WIT|1|2A|A|221
5WIT|1|2A|A|222
5WIT|1|2A|A|223
5WIT|1|2A|G|224
*
5WIT|1|2A|C|231
5WIT|1|2A|G|232
5WIT|1|2A|A|233
5WIT|1|2A|C|234
5WIT|1|2A|U|235
*
5WIT|1|2A|A|262
5WIT|1|2A|C|263
5WIT|1|2A|C|264
5WIT|1|2A|A|265
5WIT|1|2A|G|266
*
5WIT|1|2A|C|426
5WIT|1|2A|U|427
5WIT|1|2A|A|428
5WIT|1|2A|A|429
5WIT|1|2A|G|430
5WIT|1|2A|U|431
5WIT|1|2A|A|432
5WIT|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34