J6_5XYM_001

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GCC*GGGAACG*UAGGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

42 nucleotides

Bulged bases

5XYM|1|A|A|225, 5XYM|1|A|U|269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|G|45
5XYM|1|A|C|46
5XYM|1|A|C|47
*
5XYM|1|A|G|180
5XYM|1|A|G|181
5XYM|1|A|G|182
5XYM|1|A|A|183
5XYM|1|A|A|184
5XYM|1|A|C|185
5XYM|1|A|G|186
*
5XYM|1|A|U|214
5XYM|1|A|A|215
5XYM|1|A|G|216
5XYM|1|A|G|217
5XYM|1|A|A|218
5XYM|1|A|A|219
5XYM|1|A|G|220
5XYM|1|A|A|221
5XYM|1|A|G|222
5XYM|1|A|A|223
5XYM|1|A|A|224
5XYM|1|A|A|225
5XYM|1|A|A|226
*
5XYM|1|A|U|234
5XYM|1|A|G|235
5XYM|1|A|A|236
5XYM|1|A|U|237
5XYM|1|A|U|238
*
5XYM|1|A|A|265
5XYM|1|A|G|266
5XYM|1|A|G|267
5XYM|1|A|A|268
5XYM|1|A|U|269
5XYM|1|A|G|270
*
5XYM|1|A|C|517
5XYM|1|A|U|518
5XYM|1|A|G|519
5XYM|1|A|A|520
5XYM|1|A|A|521
5XYM|1|A|U|522
5XYM|1|A|A|523
5XYM|1|A|C|524

Current chains

Chain A

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34