J6_5XYM_002
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UUCA*UUUA*UG*CGCC*GACUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5XYM|1|A|C|2302, 5XYM|1|A|U|2617, 5XYM|1|A|G|2655, 5XYM|1|A|A|2657, 5XYM|1|A|U|2658
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5XYM|1|A|U|2300
5XYM|1|A|U|2301
5XYM|1|A|C|2302
5XYM|1|A|A|2303
*
5XYM|1|A|U|2470
5XYM|1|A|U|2471
5XYM|1|A|U|2472
5XYM|1|A|A|2473
*
5XYM|1|A|U|2485
5XYM|1|A|G|2486
*
5XYM|1|A|C|2508
5XYM|1|A|G|2509
5XYM|1|A|C|2510
5XYM|1|A|C|2511
*
5XYM|1|A|G|2611
5XYM|1|A|A|2612
5XYM|1|A|C|2613
5XYM|1|A|U|2614
5XYM|1|A|A|2615
5XYM|1|A|G|2616
5XYM|1|A|U|2617
5XYM|1|A|G|2618
5XYM|1|A|A|2619
5XYM|1|A|U|2620
5XYM|1|A|C|2621
5XYM|1|A|C|2622
*
5XYM|1|A|G|2648
5XYM|1|A|C|2649
5XYM|1|A|U|2650
5XYM|1|A|C|2651
5XYM|1|A|A|2652
5XYM|1|A|A|2653
5XYM|1|A|C|2654
5XYM|1|A|G|2655
5XYM|1|A|G|2656
5XYM|1|A|A|2657
5XYM|1|A|U|2658
5XYM|1|A|A|2659
5XYM|1|A|A|2660
5XYM|1|A|A|2661
5XYM|1|A|A|2662
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33 2
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
Coloring options: