J6_5XYM_003
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GC*GGAACG*UAGGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC
- Length
- 40 nucleotides
- Bulged bases
- 5XYM|1|A|A|225, 5XYM|1|A|U|269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5XYM|1|A|G|45
5XYM|1|A|C|46
*
5XYM|1|A|G|181
5XYM|1|A|G|182
5XYM|1|A|A|183
5XYM|1|A|A|184
5XYM|1|A|C|185
5XYM|1|A|G|186
*
5XYM|1|A|U|214
5XYM|1|A|A|215
5XYM|1|A|G|216
5XYM|1|A|G|217
5XYM|1|A|A|218
5XYM|1|A|A|219
5XYM|1|A|G|220
5XYM|1|A|A|221
5XYM|1|A|G|222
5XYM|1|A|A|223
5XYM|1|A|A|224
5XYM|1|A|A|225
5XYM|1|A|A|226
*
5XYM|1|A|U|234
5XYM|1|A|G|235
5XYM|1|A|A|236
5XYM|1|A|U|237
5XYM|1|A|U|238
*
5XYM|1|A|A|265
5XYM|1|A|G|266
5XYM|1|A|G|267
5XYM|1|A|A|268
5XYM|1|A|U|269
5XYM|1|A|G|270
*
5XYM|1|A|C|517
5XYM|1|A|U|518
5XYM|1|A|G|519
5XYM|1|A|A|520
5XYM|1|A|A|521
5XYM|1|A|U|522
5XYM|1|A|A|523
5XYM|1|A|C|524
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
Coloring options: