J6_5ZEP_002
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUCA*UUUA*UG*CGCC*GACUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5ZEP|1|A|C|2299, 5ZEP|1|A|G|2652, 5ZEP|1|A|A|2654, 5ZEP|1|A|U|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5ZEP|1|A|U|2297
5ZEP|1|A|U|2298
5ZEP|1|A|C|2299
5ZEP|1|A|A|2300
*
5ZEP|1|A|U|2467
5ZEP|1|A|U|2468
5ZEP|1|A|U|2469
5ZEP|1|A|A|2470
*
5ZEP|1|A|U|2482
5ZEP|1|A|G|2483
*
5ZEP|1|A|C|2505
5ZEP|1|A|G|2506
5ZEP|1|A|C|2507
5ZEP|1|A|C|2508
*
5ZEP|1|A|G|2608
5ZEP|1|A|A|2609
5ZEP|1|A|C|2610
5ZEP|1|A|U|2611
5ZEP|1|A|A|2612
5ZEP|1|A|G|2613
5ZEP|1|A|U|2614
5ZEP|1|A|G|2615
5ZEP|1|A|A|2616
5ZEP|1|A|U|2617
5ZEP|1|A|C|2618
5ZEP|1|A|C|2619
*
5ZEP|1|A|G|2645
5ZEP|1|A|C|2646
5ZEP|1|A|U|2647
5ZEP|1|A|C|2648
5ZEP|1|A|A|2649
5ZEP|1|A|A|2650
5ZEP|1|A|C|2651
5ZEP|1|A|G|2652
5ZEP|1|A|G|2653
5ZEP|1|A|A|2654
5ZEP|1|A|U|2655
5ZEP|1|A|A|2656
5ZEP|1|A|A|2657
5ZEP|1|A|A|2658
5ZEP|1|A|A|2659
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33 1
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L28
- Chain w
- Transfer RNA; tRNA
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