J6_6AGB_001
3D structure
- PDB id
- 6AGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Ribonuclease P
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- CC*GUCCUCCG*CCUGCU*AGAGAAGAAAUAUA*UCUUUACCGACC*GGUUG
- Length
- 47 nucleotides
- Bulged bases
- 6AGB|1|A|U|117, 6AGB|1|A|C|118, 6AGB|1|A|C|119, 6AGB|1|A|U|120, 6AGB|1|A|C|151, 6AGB|1|A|U|152, 6AGB|1|A|G|166, 6AGB|1|A|A|167, 6AGB|1|A|U|170, 6AGB|1|A|A|171, 6AGB|1|A|U|172, 6AGB|1|A|U|190, 6AGB|1|A|A|191, 6AGB|1|A|C|192, 6AGB|1|A|C|196, 6AGB|1|A|U|258, 6AGB|1|A|U|259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6AGB|1|A|C|112
6AGB|1|A|C|113
*
6AGB|1|A|G|116
6AGB|1|A|U|117
6AGB|1|A|C|118
6AGB|1|A|C|119
6AGB|1|A|U|120
6AGB|1|A|C|121
6AGB|1|A|C|122
6AGB|1|A|G|123
*
6AGB|1|A|C|150
6AGB|1|A|C|151
6AGB|1|A|U|152
6AGB|1|A|G|153
6AGB|1|A|C|154
6AGB|1|A|U|155
*
6AGB|1|A|A|160
6AGB|1|A|G|161
6AGB|1|A|A|162
6AGB|1|A|G|163
6AGB|1|A|A|164
6AGB|1|A|A|165
6AGB|1|A|G|166
6AGB|1|A|A|167
6AGB|1|A|A|168
6AGB|1|A|A|169
6AGB|1|A|U|170
6AGB|1|A|A|171
6AGB|1|A|U|172
6AGB|1|A|A|173
*
6AGB|1|A|U|186
6AGB|1|A|C|187
6AGB|1|A|U|188
6AGB|1|A|U|189
6AGB|1|A|U|190
6AGB|1|A|A|191
6AGB|1|A|C|192
6AGB|1|A|C|193
6AGB|1|A|G|194
6AGB|1|A|A|195
6AGB|1|A|C|196
6AGB|1|A|C|197
*
6AGB|1|A|G|256
6AGB|1|A|G|257
6AGB|1|A|U|258
6AGB|1|A|U|259
6AGB|1|A|G|260
Current chains
- Chain A
- Ribonuclease P RNA
Nearby chains
- Chain B
- Ribonucleases P/MRP protein subunit POP1
- Chain D
- RNases MRP/P 32.9 kDa subunit
Coloring options: