Loop J6_6AGB

3D structure

PDB id: 6AGB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of yeast Ribonuclease P
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.48 Å

Loop

Sequence: CC*GUCCUCCG*CCUGC*GAGAAGAAAUAUA*UCUUUACCGACC*GGUUG
Length: 45 nucleotides
Bulged bases: 6AGB|1|A|U|117, 6AGB|1|A|C|118, 6AGB|1|A|C|119, 6AGB|1|A|U|120, 6AGB|1|A|C|151, 6AGB|1|A|U|152, 6AGB|1|A|G|166, 6AGB|1|A|A|167, 6AGB|1|A|U|170, 6AGB|1|A|A|171, 6AGB|1|A|U|172, 6AGB|1|A|U|190, 6AGB|1|A|A|191, 6AGB|1|A|C|192, 6AGB|1|A|C|196, 6AGB|1|A|U|258, 6AGB|1|A|U|259
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6AGB|1|A|C|112
6AGB|1|A|C|113
*
6AGB|1|A|G|116
6AGB|1|A|U|117
6AGB|1|A|C|118
6AGB|1|A|C|119
6AGB|1|A|U|120
6AGB|1|A|C|121
6AGB|1|A|C|122
6AGB|1|A|G|123
*
6AGB|1|A|C|150
6AGB|1|A|C|151
6AGB|1|A|U|152
6AGB|1|A|G|153
6AGB|1|A|C|154
*
6AGB|1|A|G|161
6AGB|1|A|A|162
6AGB|1|A|G|163
6AGB|1|A|A|164
6AGB|1|A|A|165
6AGB|1|A|G|166
6AGB|1|A|A|167
6AGB|1|A|A|168
6AGB|1|A|A|169
6AGB|1|A|U|170
6AGB|1|A|A|171
6AGB|1|A|U|172
6AGB|1|A|A|173
*
6AGB|1|A|U|186
6AGB|1|A|C|187
6AGB|1|A|U|188
6AGB|1|A|U|189
6AGB|1|A|U|190
6AGB|1|A|A|191
6AGB|1|A|C|192
6AGB|1|A|C|193
6AGB|1|A|G|194
6AGB|1|A|A|195
6AGB|1|A|C|196
6AGB|1|A|C|197
*
6AGB|1|A|G|256
6AGB|1|A|G|257
6AGB|1|A|U|258
6AGB|1|A|U|259
6AGB|1|A|G|260

Current chains

Chain A: Ribonuclease P RNA

Nearby chains

Chain B: Ribonucleases P/MRP protein subunit POP1
Chain D: RNases MRP/P 32.9 kDa subunit

J6_6AGB_002