J6_6C4I_001

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6C4I|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C4I|1|A|G|45
6C4I|1|A|G|46
*
6C4I|1|A|C|179
6C4I|1|A|G|180
6C4I|1|A|A|181
6C4I|1|A|A|182
6C4I|1|A|C|183
*
6C4I|1|A|G|214
6C4I|1|A|G|215
6C4I|1|A|A|216
6C4I|1|A|A|217
6C4I|1|A|A|218
6C4I|1|A|A|219
6C4I|1|A|G|220
6C4I|1|A|A|221
6C4I|1|A|A|222
6C4I|1|A|A|223
6C4I|1|A|U|224
*
6C4I|1|A|A|231
6C4I|1|A|G|232
6C4I|1|A|A|233
6C4I|1|A|U|234
6C4I|1|A|U|235
*
6C4I|1|A|A|262
6C4I|1|A|G|263
6C4I|1|A|C|264
6C4I|1|A|A|265
6C4I|1|A|G|266
*
6C4I|1|A|C|426
6C4I|1|A|U|427
6C4I|1|A|A|428
6C4I|1|A|A|429
6C4I|1|A|A|430
6C4I|1|A|U|431
6C4I|1|A|A|432
6C4I|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34