J6_6C5L_003

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6C5L|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|DA|G|44
6C5L|1|DA|C|45
*
6C5L|1|DA|G|179
6C5L|1|DA|G|180
6C5L|1|DA|A|181
6C5L|1|DA|A|182
6C5L|1|DA|C|183
*
6C5L|1|DA|G|214
6C5L|1|DA|G|215
6C5L|1|DA|A|216
6C5L|1|DA|G|217
6C5L|1|DA|A|218
6C5L|1|DA|G|219
6C5L|1|DA|G|220
6C5L|1|DA|A|221
6C5L|1|DA|A|222
6C5L|1|DA|A|223
6C5L|1|DA|G|224
*
6C5L|1|DA|C|231
6C5L|1|DA|G|232
6C5L|1|DA|A|233
6C5L|1|DA|C|234
6C5L|1|DA|U|235
*
6C5L|1|DA|A|262
6C5L|1|DA|C|263
6C5L|1|DA|C|264
6C5L|1|DA|A|265
6C5L|1|DA|G|266
*
6C5L|1|DA|C|426
6C5L|1|DA|U|427
6C5L|1|DA|A|428
6C5L|1|DA|A|429
6C5L|1|DA|G|430
6C5L|1|DA|U|431
6C5L|1|DA|A|432
6C5L|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D7

50S ribosomal protein L34