J6_6CAE_001

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6CAE|1|1A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CAE|1|1A|G|44
6CAE|1|1A|C|45
*
6CAE|1|1A|G|168
6CAE|1|1A|G|169
6CAE|1|1A|A|170
6CAE|1|1A|A|171
6CAE|1|1A|C|172
*
6CAE|1|1A|G|203
6CAE|1|1A|G|204
6CAE|1|1A|A|205
6CAE|1|1A|G|206
6CAE|1|1A|A|207
6CAE|1|1A|G|208
6CAE|1|1A|G|209
6CAE|1|1A|A|210
6CAE|1|1A|A|211
6CAE|1|1A|A|212
6CAE|1|1A|G|213
*
6CAE|1|1A|C|220
6CAE|1|1A|G|221
6CAE|1|1A|A|222
6CAE|1|1A|C|223
6CAE|1|1A|U|224
*
6CAE|1|1A|A|251
6CAE|1|1A|C|252
6CAE|1|1A|C|253
6CAE|1|1A|A|254
6CAE|1|1A|G|255
*
6CAE|1|1A|C|453
6CAE|1|1A|U|454
6CAE|1|1A|A|455
6CAE|1|1A|A|456
6CAE|1|1A|G|457
6CAE|1|1A|U|458
6CAE|1|1A|A|459
6CAE|1|1A|C|460

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34