J6_6CFJ_001

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6CFJ|1|1A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFJ|1|1A|G|44
6CFJ|1|1A|C|45
*
6CFJ|1|1A|G|168
6CFJ|1|1A|G|169
6CFJ|1|1A|A|170
6CFJ|1|1A|A|171
6CFJ|1|1A|C|172
*
6CFJ|1|1A|G|203
6CFJ|1|1A|G|204
6CFJ|1|1A|A|205
6CFJ|1|1A|G|206
6CFJ|1|1A|A|207
6CFJ|1|1A|G|208
6CFJ|1|1A|G|209
6CFJ|1|1A|A|210
6CFJ|1|1A|A|211
6CFJ|1|1A|A|212
6CFJ|1|1A|G|213
*
6CFJ|1|1A|C|220
6CFJ|1|1A|G|221
6CFJ|1|1A|A|222
6CFJ|1|1A|C|223
6CFJ|1|1A|U|224
*
6CFJ|1|1A|A|251
6CFJ|1|1A|C|252
6CFJ|1|1A|C|253
6CFJ|1|1A|A|254
6CFJ|1|1A|G|255
*
6CFJ|1|1A|C|453
6CFJ|1|1A|U|454
6CFJ|1|1A|A|455
6CFJ|1|1A|A|456
6CFJ|1|1A|G|457
6CFJ|1|1A|U|458
6CFJ|1|1A|A|459
6CFJ|1|1A|C|460

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34