J6_6CFJ_002
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6CFJ|1|1A|U|2098, 6CFJ|1|1A|A|2400, 6CFJ|1|1A|U|2402, 6CFJ|1|1A|G|2440, 6CFJ|1|1A|A|2442, 6CFJ|1|1A|U|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6CFJ|1|1A|U|2096
6CFJ|1|1A|U|2097
6CFJ|1|1A|U|2098
6CFJ|1|1A|A|2099
*
6CFJ|1|1A|U|2255
6CFJ|1|1A|U|2256
6CFJ|1|1A|U|2257
6CFJ|1|1A|G|2258
*
6CFJ|1|1A|C|2270
6CFJ|1|1A|G|2271
*
6CFJ|1|1A|C|2293
6CFJ|1|1A|G|2294
6CFJ|1|1A|C|2295
6CFJ|1|1A|C|2296
*
6CFJ|1|1A|G|2396
6CFJ|1|1A|C|2397
6CFJ|1|1A|C|2398
6CFJ|1|1A|U|2399
6CFJ|1|1A|A|2400
6CFJ|1|1A|G|2401
6CFJ|1|1A|U|2402
6CFJ|1|1A|G|2403
6CFJ|1|1A|A|2404
6CFJ|1|1A|A|2405
6CFJ|1|1A|C|2406
6CFJ|1|1A|C|2407
*
6CFJ|1|1A|G|2433
6CFJ|1|1A|A|2434
6CFJ|1|1A|U|2435
6CFJ|1|1A|C|2436
6CFJ|1|1A|A|2437
6CFJ|1|1A|A|2438
6CFJ|1|1A|C|2439
6CFJ|1|1A|G|2440
6CFJ|1|1A|G|2441
6CFJ|1|1A|A|2442
6CFJ|1|1A|U|2443
6CFJ|1|1A|A|2444
6CFJ|1|1A|A|2445
6CFJ|1|1A|A|2446
6CFJ|1|1A|A|2447
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1D
- 50S ribosomal protein L2
- Chain 1P
- 50S ribosomal protein L15
- Chain 1y
- Transfer RNA; tRNA
Coloring options: