J6_6CFJ_003

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6CFJ|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFJ|1|2A|G|44
6CFJ|1|2A|C|45
*
6CFJ|1|2A|G|179
6CFJ|1|2A|G|180
6CFJ|1|2A|A|181
6CFJ|1|2A|A|182
6CFJ|1|2A|C|183
*
6CFJ|1|2A|G|214
6CFJ|1|2A|G|215
6CFJ|1|2A|A|216
6CFJ|1|2A|G|217
6CFJ|1|2A|A|218
6CFJ|1|2A|G|219
6CFJ|1|2A|G|220
6CFJ|1|2A|A|221
6CFJ|1|2A|A|222
6CFJ|1|2A|A|223
6CFJ|1|2A|G|224
*
6CFJ|1|2A|C|231
6CFJ|1|2A|G|232
6CFJ|1|2A|A|233
6CFJ|1|2A|C|234
6CFJ|1|2A|U|235
*
6CFJ|1|2A|A|262
6CFJ|1|2A|C|263
6CFJ|1|2A|C|264
6CFJ|1|2A|A|265
6CFJ|1|2A|G|266
*
6CFJ|1|2A|C|426
6CFJ|1|2A|U|427
6CFJ|1|2A|A|428
6CFJ|1|2A|A|429
6CFJ|1|2A|G|430
6CFJ|1|2A|U|431
6CFJ|1|2A|A|432
6CFJ|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34