J6_6CFK_001

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6CFK|1|1A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|1A|G|44
6CFK|1|1A|C|45
*
6CFK|1|1A|G|168
6CFK|1|1A|G|169
6CFK|1|1A|A|170
6CFK|1|1A|A|171
6CFK|1|1A|C|172
*
6CFK|1|1A|G|203
6CFK|1|1A|G|204
6CFK|1|1A|A|205
6CFK|1|1A|G|206
6CFK|1|1A|A|207
6CFK|1|1A|G|208
6CFK|1|1A|G|209
6CFK|1|1A|A|210
6CFK|1|1A|A|211
6CFK|1|1A|A|212
6CFK|1|1A|G|213
*
6CFK|1|1A|C|220
6CFK|1|1A|G|221
6CFK|1|1A|A|222
6CFK|1|1A|C|223
6CFK|1|1A|U|224
*
6CFK|1|1A|A|251
6CFK|1|1A|C|252
6CFK|1|1A|C|253
6CFK|1|1A|A|254
6CFK|1|1A|G|255
*
6CFK|1|1A|C|453
6CFK|1|1A|U|454
6CFK|1|1A|A|455
6CFK|1|1A|A|456
6CFK|1|1A|G|457
6CFK|1|1A|U|458
6CFK|1|1A|A|459
6CFK|1|1A|C|460

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34