3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
Length
36 nucleotides
Bulged bases
6CFK|1|2A|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6CFK|1|2A|G|44
6CFK|1|2A|C|45
*
6CFK|1|2A|G|179
6CFK|1|2A|G|180
6CFK|1|2A|A|181
6CFK|1|2A|A|182
6CFK|1|2A|C|183
*
6CFK|1|2A|G|214
6CFK|1|2A|G|215
6CFK|1|2A|A|216
6CFK|1|2A|G|217
6CFK|1|2A|A|218
6CFK|1|2A|G|219
6CFK|1|2A|G|220
6CFK|1|2A|A|221
6CFK|1|2A|A|222
6CFK|1|2A|A|223
6CFK|1|2A|G|224
*
6CFK|1|2A|C|231
6CFK|1|2A|G|232
6CFK|1|2A|A|233
6CFK|1|2A|C|234
6CFK|1|2A|U|235
*
6CFK|1|2A|A|262
6CFK|1|2A|C|263
6CFK|1|2A|C|264
6CFK|1|2A|A|265
6CFK|1|2A|G|266
*
6CFK|1|2A|C|426
6CFK|1|2A|U|427
6CFK|1|2A|A|428
6CFK|1|2A|A|429
6CFK|1|2A|G|430
6CFK|1|2A|U|431
6CFK|1|2A|A|432
6CFK|1|2A|C|433

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34

Coloring options:

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