J6_6CFK_004

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6CFK|1|2A|U|2076, 6CFK|1|2A|A|2388, 6CFK|1|2A|U|2390, 6CFK|1|2A|G|2428, 6CFK|1|2A|A|2430, 6CFK|1|2A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|2A|U|2074
6CFK|1|2A|U|2075
6CFK|1|2A|U|2076
6CFK|1|2A|A|2077
*
6CFK|1|2A|U|2243
6CFK|1|2A|U|2244
6CFK|1|2A|U|2245
6CFK|1|2A|G|2246
*
6CFK|1|2A|C|2258
6CFK|1|2A|G|2259
*
6CFK|1|2A|C|2281
6CFK|1|2A|G|2282
6CFK|1|2A|C|2283
6CFK|1|2A|C|2284
*
6CFK|1|2A|G|2384
6CFK|1|2A|C|2385
6CFK|1|2A|C|2386
6CFK|1|2A|U|2387
6CFK|1|2A|A|2388
6CFK|1|2A|G|2389
6CFK|1|2A|U|2390
6CFK|1|2A|G|2391
6CFK|1|2A|A|2392
6CFK|1|2A|A|2393
6CFK|1|2A|C|2394
6CFK|1|2A|C|2395
*
6CFK|1|2A|G|2421
6CFK|1|2A|A|2422
6CFK|1|2A|U|2423
6CFK|1|2A|C|2424
6CFK|1|2A|A|2425
6CFK|1|2A|A|2426
6CFK|1|2A|C|2427
6CFK|1|2A|G|2428
6CFK|1|2A|G|2429
6CFK|1|2A|A|2430
6CFK|1|2A|U|2431
6CFK|1|2A|A|2432
6CFK|1|2A|A|2433
6CFK|1|2A|A|2434
6CFK|1|2A|A|2435

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 21

50S ribosomal protein L28

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2D

50S ribosomal protein L2

Chain 2P

50S ribosomal protein L15

Chain 2Z

50S ribosomal protein L25