J6_6CFL_003

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6CFL|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|2A|G|44
6CFL|1|2A|C|45
*
6CFL|1|2A|G|179
6CFL|1|2A|G|180
6CFL|1|2A|A|181
6CFL|1|2A|A|182
6CFL|1|2A|C|183
*
6CFL|1|2A|G|214
6CFL|1|2A|G|215
6CFL|1|2A|A|216
6CFL|1|2A|G|217
6CFL|1|2A|A|218
6CFL|1|2A|G|219
6CFL|1|2A|G|220
6CFL|1|2A|A|221
6CFL|1|2A|A|222
6CFL|1|2A|A|223
6CFL|1|2A|G|224
*
6CFL|1|2A|C|231
6CFL|1|2A|G|232
6CFL|1|2A|A|233
6CFL|1|2A|C|234
6CFL|1|2A|U|235
*
6CFL|1|2A|A|262
6CFL|1|2A|C|263
6CFL|1|2A|C|264
6CFL|1|2A|A|265
6CFL|1|2A|G|266
*
6CFL|1|2A|C|426
6CFL|1|2A|U|427
6CFL|1|2A|A|428
6CFL|1|2A|A|429
6CFL|1|2A|G|430
6CFL|1|2A|U|431
6CFL|1|2A|A|432
6CFL|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34