Loop J6_6CFL

3D structure

PDB id: 6CFL (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å

Loop

Sequence: UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 6CFL|1|2A|U|2076, 6CFL|1|2A|A|2388, 6CFL|1|2A|U|2390, 6CFL|1|2A|G|2428, 6CFL|1|2A|A|2430, 6CFL|1|2A|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6CFL|1|2A|U|2074
6CFL|1|2A|U|2075
6CFL|1|2A|U|2076
6CFL|1|2A|A|2077
*
6CFL|1|2A|U|2243
6CFL|1|2A|U|2244
6CFL|1|2A|U|2245
6CFL|1|2A|G|2246
*
6CFL|1|2A|C|2258
6CFL|1|2A|G|2259
*
6CFL|1|2A|C|2281
6CFL|1|2A|G|2282
6CFL|1|2A|C|2283
6CFL|1|2A|C|2284
*
6CFL|1|2A|G|2384
6CFL|1|2A|C|2385
6CFL|1|2A|C|2386
6CFL|1|2A|U|2387
6CFL|1|2A|A|2388
6CFL|1|2A|G|2389
6CFL|1|2A|U|2390
6CFL|1|2A|G|2391
6CFL|1|2A|A|2392
6CFL|1|2A|A|2393
6CFL|1|2A|C|2394
6CFL|1|2A|C|2395
*
6CFL|1|2A|G|2421
6CFL|1|2A|A|2422
6CFL|1|2A|U|2423
6CFL|1|2A|C|2424
6CFL|1|2A|A|2425
6CFL|1|2A|A|2426
6CFL|1|2A|C|2427
6CFL|1|2A|G|2428
6CFL|1|2A|G|2429
6CFL|1|2A|A|2430
6CFL|1|2A|U|2431
6CFL|1|2A|A|2432
6CFL|1|2A|A|2433
6CFL|1|2A|A|2434
6CFL|1|2A|A|2435

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 20: 50S ribosomal protein L27
Chain 21: 50S ribosomal protein L28
Chain 26: 50S ribosomal protein L33
Chain 28: 50S ribosomal protein L35
Chain 2D: 50S ribosomal protein L2
Chain 2P: 50S ribosomal protein L15
Chain 2Z: 50S ribosomal protein L25

J6_6CFL_004