J6_6DDD_001
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC
- Length
- 37 nucleotides
- Bulged bases
- 6DDD|1|1|C|184, 6DDD|1|1|A|226
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DDD|1|1|G|45
6DDD|1|1|C|46
*
6DDD|1|1|G|181
6DDD|1|1|C|182
6DDD|1|1|A|183
6DDD|1|1|C|184
6DDD|1|1|A|185
6DDD|1|1|C|186
*
6DDD|1|1|G|217
6DDD|1|1|G|218
6DDD|1|1|A|219
6DDD|1|1|A|220
6DDD|1|1|G|221
6DDD|1|1|A|222
6DDD|1|1|G|223
6DDD|1|1|A|224
6DDD|1|1|A|225
6DDD|1|1|A|226
6DDD|1|1|G|227
*
6DDD|1|1|C|234
6DDD|1|1|G|235
6DDD|1|1|A|236
6DDD|1|1|U|237
6DDD|1|1|U|238
*
6DDD|1|1|A|265
6DDD|1|1|A|266
6DDD|1|1|G|267
6DDD|1|1|A|268
6DDD|1|1|G|269
*
6DDD|1|1|C|472
6DDD|1|1|U|473
6DDD|1|1|A|474
6DDD|1|1|A|475
6DDD|1|1|A|476
6DDD|1|1|U|477
6DDD|1|1|A|478
6DDD|1|1|C|479
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain P
- 50S ribosomal protein L34
Coloring options: