J6_6DDG_002
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCU*ACUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6DDG|1|1|U|2103, 6DDG|1|1|A|2415, 6DDG|1|1|U|2417, 6DDG|1|1|G|2455, 6DDG|1|1|A|2457, 6DDG|1|1|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DDG|1|1|U|2101
6DDG|1|1|U|2102
6DDG|1|1|U|2103
6DDG|1|1|A|2104
*
6DDG|1|1|U|2270
6DDG|1|1|U|2271
6DDG|1|1|U|2272
6DDG|1|1|G|2273
*
6DDG|1|1|C|2285
6DDG|1|1|G|2286
*
6DDG|1|1|C|2308
6DDG|1|1|G|2309
6DDG|1|1|C|2310
6DDG|1|1|U|2311
*
6DDG|1|1|A|2411
6DDG|1|1|C|2412
6DDG|1|1|U|2413
6DDG|1|1|U|2414
6DDG|1|1|A|2415
6DDG|1|1|G|2416
6DDG|1|1|U|2417
6DDG|1|1|G|2418
6DDG|1|1|A|2419
6DDG|1|1|U|2420
6DDG|1|1|C|2421
6DDG|1|1|C|2422
*
6DDG|1|1|G|2448
6DDG|1|1|C|2449
6DDG|1|1|U|2450
6DDG|1|1|C|2451
6DDG|1|1|A|2452
6DDG|1|1|A|2453
6DDG|1|1|C|2454
6DDG|1|1|G|2455
6DDG|1|1|G|2456
6DDG|1|1|A|2457
6DDG|1|1|U|2458
6DDG|1|1|A|2459
6DDG|1|1|A|2460
6DDG|1|1|A|2461
6DDG|1|1|A|2462
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L27
- Chain J
- 50S ribosomal protein L28
- Chain O
- 50S ribosomal protein L33
- Chain Q
- 50S ribosomal protein L35
- Chain X
- 50S ribosomal protein L15
Coloring options: