J6_6DZI_001

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

6DZI|1|A|A|222, 6DZI|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZI|1|A|G|42
6DZI|1|A|C|43
*
6DZI|1|A|G|178
6DZI|1|A|G|179
6DZI|1|A|A|180
6DZI|1|A|A|181
6DZI|1|A|C|182
*
6DZI|1|A|G|213
6DZI|1|A|G|214
6DZI|1|A|A|215
6DZI|1|A|A|216
6DZI|1|A|G|217
6DZI|1|A|A|218
6DZI|1|A|G|219
6DZI|1|A|A|220
6DZI|1|A|A|221
6DZI|1|A|A|222
6DZI|1|A|A|223
*
6DZI|1|A|U|231
6DZI|1|A|G|232
6DZI|1|A|A|233
6DZI|1|A|U|234
6DZI|1|A|U|235
*
6DZI|1|A|A|262
6DZI|1|A|G|263
6DZI|1|A|G|264
6DZI|1|A|A|265
6DZI|1|A|U|266
6DZI|1|A|G|267
*
6DZI|1|A|C|514
6DZI|1|A|U|515
6DZI|1|A|G|516
6DZI|1|A|A|517
6DZI|1|A|A|518
6DZI|1|A|U|519
6DZI|1|A|A|520
6DZI|1|A|C|521

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain d

50S ribosomal protein L34