J6_6DZP_001

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

6DZP|1|A|A|222, 6DZP|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZP|1|A|G|42
6DZP|1|A|C|43
*
6DZP|1|A|G|178
6DZP|1|A|G|179
6DZP|1|A|A|180
6DZP|1|A|A|181
6DZP|1|A|C|182
*
6DZP|1|A|G|213
6DZP|1|A|G|214
6DZP|1|A|A|215
6DZP|1|A|A|216
6DZP|1|A|G|217
6DZP|1|A|A|218
6DZP|1|A|G|219
6DZP|1|A|A|220
6DZP|1|A|A|221
6DZP|1|A|A|222
6DZP|1|A|A|223
*
6DZP|1|A|U|231
6DZP|1|A|G|232
6DZP|1|A|A|233
6DZP|1|A|U|234
6DZP|1|A|U|235
*
6DZP|1|A|A|262
6DZP|1|A|G|263
6DZP|1|A|G|264
6DZP|1|A|A|265
6DZP|1|A|U|266
6DZP|1|A|G|267
*
6DZP|1|A|C|514
6DZP|1|A|U|515
6DZP|1|A|G|516
6DZP|1|A|A|517
6DZP|1|A|A|518
6DZP|1|A|U|519
6DZP|1|A|A|520
6DZP|1|A|C|521

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34