J6_6DZP_002
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- UUCA*UUUA*UG*CGCC*GACUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6DZP|1|A|C|2299, 6DZP|1|A|U|2614, 6DZP|1|A|G|2652, 6DZP|1|A|A|2654, 6DZP|1|A|U|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DZP|1|A|U|2297
6DZP|1|A|U|2298
6DZP|1|A|C|2299
6DZP|1|A|A|2300
*
6DZP|1|A|U|2467
6DZP|1|A|U|2468
6DZP|1|A|U|2469
6DZP|1|A|A|2470
*
6DZP|1|A|U|2482
6DZP|1|A|G|2483
*
6DZP|1|A|C|2505
6DZP|1|A|G|2506
6DZP|1|A|C|2507
6DZP|1|A|C|2508
*
6DZP|1|A|G|2608
6DZP|1|A|A|2609
6DZP|1|A|C|2610
6DZP|1|A|U|2611
6DZP|1|A|A|2612
6DZP|1|A|G|2613
6DZP|1|A|U|2614
6DZP|1|A|G|2615
6DZP|1|A|A|2616
6DZP|1|A|U|2617
6DZP|1|A|C|2618
6DZP|1|A|C|2619
*
6DZP|1|A|G|2645
6DZP|1|A|C|2646
6DZP|1|A|U|2647
6DZP|1|A|C|2648
6DZP|1|A|A|2649
6DZP|1|A|A|2650
6DZP|1|A|C|2651
6DZP|1|A|G|2652
6DZP|1|A|G|2653
6DZP|1|A|A|2654
6DZP|1|A|U|2655
6DZP|1|A|A|2656
6DZP|1|A|A|2657
6DZP|1|A|A|2658
6DZP|1|A|A|2659
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain c
- 50S ribosomal protein L33 2
- Chain e
- 50S ribosomal protein L35
- Chain y
- 50S ribosomal protein L28
Coloring options: