J6_6EM1_001
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 6EM1|1|1|A|67, 6EM1|1|1|U|329, 6EM1|1|2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EM1|1|1|G|22
6EM1|1|1|A|23
6EM1|1|1|G|24
6EM1|1|1|U|25
6EM1|1|1|A|26
6EM1|1|1|C|27
*
6EM1|1|1|G|58
6EM1|1|1|G|59
6EM1|1|1|A|60
6EM1|1|1|A|61
6EM1|1|1|A|62
6EM1|1|1|A|63
6EM1|1|1|G|64
6EM1|1|1|A|65
6EM1|1|1|A|66
6EM1|1|1|A|67
6EM1|1|1|C|68
*
6EM1|1|1|G|75
6EM1|1|1|G|76
6EM1|1|1|A|77
6EM1|1|1|U|78
6EM1|1|1|U|79
*
6EM1|1|1|A|106
6EM1|1|1|A|107
6EM1|1|1|A|108
6EM1|1|1|A|109
6EM1|1|1|G|110
*
6EM1|1|1|C|321
6EM1|1|1|U|322
6EM1|1|1|A|323
6EM1|1|1|A|324
6EM1|1|1|A|325
6EM1|1|1|U|326
6EM1|1|1|A|327
6EM1|1|1|U|328
6EM1|1|1|U|329
6EM1|1|1|G|330
6EM1|1|1|G|331
*
6EM1|1|2|C|32
6EM1|1|2|A|33
6EM1|1|2|U|34
6EM1|1|2|C|35
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 2
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
Coloring options: