J6_6FKR_003

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6FKR|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FKR|1|2A|G|44
6FKR|1|2A|C|45
*
6FKR|1|2A|G|179
6FKR|1|2A|G|180
6FKR|1|2A|A|181
6FKR|1|2A|A|182
6FKR|1|2A|C|183
*
6FKR|1|2A|G|214
6FKR|1|2A|G|215
6FKR|1|2A|A|216
6FKR|1|2A|G|217
6FKR|1|2A|A|218
6FKR|1|2A|G|219
6FKR|1|2A|G|220
6FKR|1|2A|A|221
6FKR|1|2A|A|222
6FKR|1|2A|A|223
6FKR|1|2A|G|224
*
6FKR|1|2A|C|231
6FKR|1|2A|G|232
6FKR|1|2A|A|233
6FKR|1|2A|C|234
6FKR|1|2A|U|235
*
6FKR|1|2A|A|262
6FKR|1|2A|C|263
6FKR|1|2A|C|264
6FKR|1|2A|A|265
6FKR|1|2A|G|266
*
6FKR|1|2A|C|426
6FKR|1|2A|U|427
6FKR|1|2A|A|428
6FKR|1|2A|A|429
6FKR|1|2A|G|430
6FKR|1|2A|U|431
6FKR|1|2A|A|432
6FKR|1|2A|C|433

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34