J6_6FT6_002
3D structure
- PDB id
- 6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUUUCUGCCCAGUGCU*GGUAAACGGCGG*CUUAAGGUAGCCA*UGGAUUAAC
- Length
- 62 nucleotides
- Bulged bases
- 6FT6|1|1|U|2193, 6FT6|1|1|G|2194, 6FT6|1|1|A|2198, 6FT6|1|1|A|2243, 6FT6|1|1|A|2244, 6FT6|1|1|U|2269, 6FT6|1|1|G|2272, 6FT6|1|1|G|2273, 6FT6|1|1|U|2274, 6FT6|1|1|A|2275, 6FT6|1|1|G|2316, 6FT6|1|1|U|2318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FT6|1|1|G|2130
6FT6|1|1|A|2131
6FT6|1|1|C|2132
6FT6|1|1|U|2133
6FT6|1|1|G|2134
*
6FT6|1|1|C|2146
6FT6|1|1|A|2147
6FT6|1|1|U|2148
6FT6|1|1|A|2149
6FT6|1|1|G|2150
*
6FT6|1|1|U|2186
6FT6|1|1|G|2187
6FT6|1|1|A|2188
6FT6|1|1|U|2189
6FT6|1|1|U|2190
6FT6|1|1|U|2191
6FT6|1|1|C|2192
6FT6|1|1|U|2193
6FT6|1|1|G|2194
6FT6|1|1|C|2195
6FT6|1|1|C|2196
6FT6|1|1|C|2197
6FT6|1|1|A|2198
6FT6|1|1|G|2199
6FT6|1|1|U|2200
6FT6|1|1|G|2201
6FT6|1|1|C|2202
6FT6|1|1|U|2203
*
6FT6|1|1|G|2239
6FT6|1|1|G|2240
6FT6|1|1|U|2241
6FT6|1|1|A|2242
6FT6|1|1|A|2243
6FT6|1|1|A|2244
6FT6|1|1|C|2245
6FT6|1|1|G|2246
6FT6|1|1|G|2247
6FT6|1|1|C|2248
6FT6|1|1|G|2249
6FT6|1|1|G|2250
*
6FT6|1|1|C|2267
6FT6|1|1|U|2268
6FT6|1|1|U|2269
6FT6|1|1|A|2270
6FT6|1|1|A|2271
6FT6|1|1|G|2272
6FT6|1|1|G|2273
6FT6|1|1|U|2274
6FT6|1|1|A|2275
6FT6|1|1|G|2276
6FT6|1|1|C|2277
6FT6|1|1|C|2278
6FT6|1|1|A|2279
*
6FT6|1|1|U|2314
6FT6|1|1|G|2315
6FT6|1|1|G|2316
6FT6|1|1|A|2317
6FT6|1|1|U|2318
6FT6|1|1|U|2319
6FT6|1|1|A|2320
6FT6|1|1|A|2321
6FT6|1|1|C|2322
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain p
- 60S ribosomal protein L43-A
- Chain v
- Ribosome biogenesis protein RPF2
- Chain x
- Ribosome assembly protein 4
Coloring options: