J6_6FTJ_001
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 6FTJ|1|u|A|66, 6FTJ|1|w|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FTJ|1|u|G|21
6FTJ|1|u|G|22
6FTJ|1|u|C|23
6FTJ|1|u|G|24
6FTJ|1|u|A|25
6FTJ|1|u|C|26
*
6FTJ|1|u|G|57
6FTJ|1|u|G|58
6FTJ|1|u|A|59
6FTJ|1|u|G|60
6FTJ|1|u|A|61
6FTJ|1|u|A|62
6FTJ|1|u|G|63
6FTJ|1|u|A|64
6FTJ|1|u|A|65
6FTJ|1|u|A|66
6FTJ|1|u|C|67
*
6FTJ|1|u|G|74
6FTJ|1|u|G|75
6FTJ|1|u|A|76
6FTJ|1|u|U|77
6FTJ|1|u|U|78
*
6FTJ|1|u|A|105
6FTJ|1|u|A|106
6FTJ|1|u|G|107
6FTJ|1|u|A|108
6FTJ|1|u|G|109
*
6FTJ|1|u|C|332
6FTJ|1|u|U|333
6FTJ|1|u|A|334
6FTJ|1|u|A|335
6FTJ|1|u|A|336
6FTJ|1|u|U|337
6FTJ|1|u|A|338
6FTJ|1|u|C|339
*
6FTJ|1|w|G|33
6FTJ|1|w|U|34
6FTJ|1|w|C|35
Current chains
- Chain u
- 28S rRNA
- Chain w
- 5.8S ribosomal RNA
Nearby chains
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain h
- uL29
- Chain i
- 60S ribosomal protein L36
- Chain j
- Ribosomal protein L37
Coloring options: