J6_6GC4_001

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

6GC4|1|A|A|223, 6GC4|1|A|C|264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC4|1|A|G|45
6GC4|1|A|G|46
*
6GC4|1|A|C|179
6GC4|1|A|G|180
6GC4|1|A|A|181
6GC4|1|A|A|182
6GC4|1|A|C|183
*
6GC4|1|A|G|214
6GC4|1|A|G|215
6GC4|1|A|A|216
6GC4|1|A|A|217
6GC4|1|A|A|218
6GC4|1|A|A|219
6GC4|1|A|G|220
6GC4|1|A|A|221
6GC4|1|A|A|222
6GC4|1|A|A|223
6GC4|1|A|U|224
*
6GC4|1|A|A|231
6GC4|1|A|G|232
6GC4|1|A|A|233
6GC4|1|A|U|234
6GC4|1|A|U|235
*
6GC4|1|A|A|262
6GC4|1|A|G|263
6GC4|1|A|C|264
6GC4|1|A|A|265
6GC4|1|A|G|266
*
6GC4|1|A|C|426
6GC4|1|A|U|427
6GC4|1|A|A|428
6GC4|1|A|A|429
6GC4|1|A|A|430
6GC4|1|A|U|431
6GC4|1|A|A|432
6GC4|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34