J6_6GC6_001

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

6GC6|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC6|1|A|G|45
6GC6|1|A|G|46
*
6GC6|1|A|C|179
6GC6|1|A|G|180
6GC6|1|A|A|181
6GC6|1|A|A|182
6GC6|1|A|C|183
6GC6|1|A|C|184
*
6GC6|1|A|G|212
6GC6|1|A|A|213
6GC6|1|A|G|214
6GC6|1|A|G|215
6GC6|1|A|A|216
6GC6|1|A|A|217
6GC6|1|A|A|218
6GC6|1|A|A|219
6GC6|1|A|G|220
6GC6|1|A|A|221
6GC6|1|A|A|222
6GC6|1|A|A|223
6GC6|1|A|U|224
*
6GC6|1|A|A|231
6GC6|1|A|G|232
6GC6|1|A|A|233
6GC6|1|A|U|234
6GC6|1|A|U|235
*
6GC6|1|A|A|262
6GC6|1|A|G|263
6GC6|1|A|C|264
6GC6|1|A|A|265
6GC6|1|A|G|266
*
6GC6|1|A|C|426
6GC6|1|A|U|427
6GC6|1|A|A|428
6GC6|1|A|A|429
6GC6|1|A|A|430
6GC6|1|A|U|431
6GC6|1|A|A|432
6GC6|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34