J6_6GC7_001

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

6GC7|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC7|1|A|G|45
6GC7|1|A|G|46
*
6GC7|1|A|C|179
6GC7|1|A|G|180
6GC7|1|A|A|181
6GC7|1|A|A|182
6GC7|1|A|C|183
6GC7|1|A|C|184
*
6GC7|1|A|G|212
6GC7|1|A|A|213
6GC7|1|A|G|214
6GC7|1|A|G|215
6GC7|1|A|A|216
6GC7|1|A|A|217
6GC7|1|A|A|218
6GC7|1|A|A|219
6GC7|1|A|G|220
6GC7|1|A|A|221
6GC7|1|A|A|222
6GC7|1|A|A|223
6GC7|1|A|U|224
*
6GC7|1|A|A|231
6GC7|1|A|G|232
6GC7|1|A|A|233
6GC7|1|A|U|234
6GC7|1|A|U|235
*
6GC7|1|A|A|262
6GC7|1|A|G|263
6GC7|1|A|C|264
6GC7|1|A|A|265
6GC7|1|A|G|266
*
6GC7|1|A|C|426
6GC7|1|A|U|427
6GC7|1|A|A|428
6GC7|1|A|A|429
6GC7|1|A|A|430
6GC7|1|A|U|431
6GC7|1|A|A|432
6GC7|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34