3D structure

PDB id
6GC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate - 50S rec*
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
Length
36 nucleotides
Bulged bases
6GC8|1|A|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GC8|1|A|G|45
6GC8|1|A|G|46
*
6GC8|1|A|C|179
6GC8|1|A|G|180
6GC8|1|A|A|181
6GC8|1|A|A|182
6GC8|1|A|C|183
*
6GC8|1|A|G|214
6GC8|1|A|G|215
6GC8|1|A|A|216
6GC8|1|A|A|217
6GC8|1|A|A|218
6GC8|1|A|A|219
6GC8|1|A|G|220
6GC8|1|A|A|221
6GC8|1|A|A|222
6GC8|1|A|A|223
6GC8|1|A|U|224
*
6GC8|1|A|A|231
6GC8|1|A|G|232
6GC8|1|A|A|233
6GC8|1|A|U|234
6GC8|1|A|U|235
*
6GC8|1|A|A|262
6GC8|1|A|G|263
6GC8|1|A|C|264
6GC8|1|A|A|265
6GC8|1|A|G|266
*
6GC8|1|A|C|426
6GC8|1|A|U|427
6GC8|1|A|A|428
6GC8|1|A|A|429
6GC8|1|A|A|430
6GC8|1|A|U|431
6GC8|1|A|A|432
6GC8|1|A|C|433

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34

Coloring options:

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