3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length
42 nucleotides
Bulged bases
6GQ1|1|1|A|67, 6GQ1|1|1|U|329, 6GQ1|1|4|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GQ1|1|1|G|22
6GQ1|1|1|A|23
6GQ1|1|1|G|24
6GQ1|1|1|U|25
6GQ1|1|1|A|26
6GQ1|1|1|C|27
*
6GQ1|1|1|G|58
6GQ1|1|1|G|59
6GQ1|1|1|A|60
6GQ1|1|1|A|61
6GQ1|1|1|A|62
6GQ1|1|1|A|63
6GQ1|1|1|G|64
6GQ1|1|1|A|65
6GQ1|1|1|A|66
6GQ1|1|1|A|67
6GQ1|1|1|C|68
*
6GQ1|1|1|G|75
6GQ1|1|1|G|76
6GQ1|1|1|A|77
6GQ1|1|1|U|78
6GQ1|1|1|U|79
*
6GQ1|1|1|A|106
6GQ1|1|1|A|107
6GQ1|1|1|A|108
6GQ1|1|1|A|109
6GQ1|1|1|G|110
*
6GQ1|1|1|C|321
6GQ1|1|1|U|322
6GQ1|1|1|A|323
6GQ1|1|1|A|324
6GQ1|1|1|A|325
6GQ1|1|1|U|326
6GQ1|1|1|A|327
6GQ1|1|1|U|328
6GQ1|1|1|U|329
6GQ1|1|1|G|330
6GQ1|1|1|G|331
*
6GQ1|1|4|C|32
6GQ1|1|4|A|33
6GQ1|1|4|U|34
6GQ1|1|4|C|35

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Chain 4
5S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain L
60S ribosomal protein L13-A
Chain N
60S ribosomal protein L15-A
Chain h
60S ribosomal protein L35-A
Chain i
60S ribosomal protein L36-A
Chain j
60S ribosomal protein L37-A

Coloring options:

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