3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
Length
38 nucleotides
Bulged bases
6GQ1|1|1|G|2418, 6GQ1|1|1|C|2760, 6GQ1|1|1|A|2799, 6GQ1|1|1|A|2801, 6GQ1|1|1|A|2802, 6GQ1|1|1|A|2803
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GQ1|1|1|U|2416
6GQ1|1|1|U|2417
6GQ1|1|1|G|2418
6GQ1|1|1|A|2419
*
6GQ1|1|1|U|2611
6GQ1|1|1|U|2612
6GQ1|1|1|U|2613
6GQ1|1|1|G|2614
*
6GQ1|1|1|C|2627
6GQ1|1|1|A|2628
*
6GQ1|1|1|U|2650
6GQ1|1|1|G|2651
6GQ1|1|1|U|2652
6GQ1|1|1|C|2653
*
6GQ1|1|1|G|2754
6GQ1|1|1|C|2755
6GQ1|1|1|C|2756
6GQ1|1|1|U|2757
6GQ1|1|1|A|2758
6GQ1|1|1|U|2759
6GQ1|1|1|C|2760
6GQ1|1|1|G|2761
6GQ1|1|1|A|2762
6GQ1|1|1|U|2763
6GQ1|1|1|C|2764
6GQ1|1|1|C|2765
*
6GQ1|1|1|G|2793
6GQ1|1|1|G|2794
6GQ1|1|1|U|2795
6GQ1|1|1|G|2796
6GQ1|1|1|C|2797
6GQ1|1|1|C|2798
6GQ1|1|1|A|2799
6GQ1|1|1|G|2800
6GQ1|1|1|A|2801
6GQ1|1|1|A|2802
6GQ1|1|1|A|2803
6GQ1|1|1|A|2804

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain AX
Transfer RNA; tRNA
Chain N
60S ribosomal protein L15-A
Chain Q
60S ribosomal protein L18-A
Chain T
60S ribosomal protein L21-A
Chain a
60S ribosomal protein L28
Chain b
60S ribosomal protein L29
Chain o
60S ribosomal protein L42-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3633 s