J6_6GSJ_002
3D structure
- PDB id
- 6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6GSJ|1|14|U|2076, 6GSJ|1|14|A|2388, 6GSJ|1|14|U|2390, 6GSJ|1|14|G|2428, 6GSJ|1|14|A|2430, 6GSJ|1|14|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GSJ|1|14|U|2074
6GSJ|1|14|U|2075
6GSJ|1|14|U|2076
6GSJ|1|14|A|2077
*
6GSJ|1|14|U|2243
6GSJ|1|14|U|2244
6GSJ|1|14|U|2245
6GSJ|1|14|G|2246
*
6GSJ|1|14|C|2258
6GSJ|1|14|G|2259
*
6GSJ|1|14|C|2281
6GSJ|1|14|G|2282
6GSJ|1|14|C|2283
6GSJ|1|14|C|2284
*
6GSJ|1|14|G|2384
6GSJ|1|14|C|2385
6GSJ|1|14|C|2386
6GSJ|1|14|U|2387
6GSJ|1|14|A|2388
6GSJ|1|14|G|2389
6GSJ|1|14|U|2390
6GSJ|1|14|G|2391
6GSJ|1|14|A|2392
6GSJ|1|14|A|2393
6GSJ|1|14|C|2394
6GSJ|1|14|C|2395
*
6GSJ|1|14|G|2421
6GSJ|1|14|A|2422
6GSJ|1|14|U|2423
6GSJ|1|14|C|2424
6GSJ|1|14|A|2425
6GSJ|1|14|A|2426
6GSJ|1|14|C|2427
6GSJ|1|14|G|2428
6GSJ|1|14|G|2429
6GSJ|1|14|A|2430
6GSJ|1|14|U|2431
6GSJ|1|14|A|2432
6GSJ|1|14|A|2433
6GSJ|1|14|A|2434
6GSJ|1|14|A|2435
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L2
- Chain 35
- 50S ribosomal protein L15
- Chain 3L
- Transfer RNA; tRNA
- Chain E5
- 50S ribosomal protein L27
- Chain F5
- 50S ribosomal protein L28
- Chain M5
- 50S ribosomal protein L35
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