J6_6GSK_001

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6GSK|1|14|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSK|1|14|G|45
6GSK|1|14|C|46
*
6GSK|1|14|G|179
6GSK|1|14|G|180
6GSK|1|14|A|181
6GSK|1|14|A|182
6GSK|1|14|C|183
*
6GSK|1|14|G|214
6GSK|1|14|G|215
6GSK|1|14|A|216
6GSK|1|14|G|217
6GSK|1|14|A|218
6GSK|1|14|G|219
6GSK|1|14|G|220
6GSK|1|14|A|221
6GSK|1|14|A|222
6GSK|1|14|A|223
6GSK|1|14|G|224
*
6GSK|1|14|C|231
6GSK|1|14|G|232
6GSK|1|14|A|233
6GSK|1|14|C|234
6GSK|1|14|U|235
*
6GSK|1|14|A|262
6GSK|1|14|C|263
6GSK|1|14|C|264
6GSK|1|14|A|265
6GSK|1|14|G|266
*
6GSK|1|14|C|426
6GSK|1|14|U|427
6GSK|1|14|A|428
6GSK|1|14|A|429
6GSK|1|14|G|430
6GSK|1|14|U|431
6GSK|1|14|A|432
6GSK|1|14|C|433

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34