J6_6GSL_002

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6GSL|1|14|U|2076, 6GSL|1|14|A|2388, 6GSL|1|14|U|2390, 6GSL|1|14|G|2428, 6GSL|1|14|A|2430, 6GSL|1|14|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSL|1|14|U|2074
6GSL|1|14|U|2075
6GSL|1|14|U|2076
6GSL|1|14|A|2077
*
6GSL|1|14|U|2243
6GSL|1|14|U|2244
6GSL|1|14|U|2245
6GSL|1|14|G|2246
*
6GSL|1|14|C|2258
6GSL|1|14|G|2259
*
6GSL|1|14|C|2281
6GSL|1|14|G|2282
6GSL|1|14|C|2283
6GSL|1|14|C|2284
*
6GSL|1|14|G|2384
6GSL|1|14|C|2385
6GSL|1|14|C|2386
6GSL|1|14|U|2387
6GSL|1|14|A|2388
6GSL|1|14|G|2389
6GSL|1|14|U|2390
6GSL|1|14|G|2391
6GSL|1|14|A|2392
6GSL|1|14|A|2393
6GSL|1|14|C|2394
6GSL|1|14|C|2395
*
6GSL|1|14|G|2421
6GSL|1|14|A|2422
6GSL|1|14|U|2423
6GSL|1|14|C|2424
6GSL|1|14|A|2425
6GSL|1|14|A|2426
6GSL|1|14|C|2427
6GSL|1|14|G|2428
6GSL|1|14|G|2429
6GSL|1|14|A|2430
6GSL|1|14|U|2431
6GSL|1|14|A|2432
6GSL|1|14|A|2433
6GSL|1|14|A|2434
6GSL|1|14|A|2435

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 35

50S ribosomal protein L15

Chain 3L

Transfer RNA; tRNA

Chain E5

50S ribosomal protein L27

Chain F5

50S ribosomal protein L28

Chain M5

50S ribosomal protein L35