3D structure

PDB id
6GWT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
6GWT|1|A|U|2076, 6GWT|1|A|A|2388, 6GWT|1|A|U|2390, 6GWT|1|A|U|2423, 6GWT|1|A|G|2428, 6GWT|1|A|A|2430, 6GWT|1|A|U|2431, 6GWT|1|A|A|2434
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GWT|1|A|U|2074
6GWT|1|A|U|2075
6GWT|1|A|U|2076
6GWT|1|A|A|2077
*
6GWT|1|A|U|2243
6GWT|1|A|U|2244
6GWT|1|A|U|2245
6GWT|1|A|G|2246
*
6GWT|1|A|C|2258
6GWT|1|A|U|2259
*
6GWT|1|A|A|2281
6GWT|1|A|G|2282
6GWT|1|A|C|2283
6GWT|1|A|A|2284
*
6GWT|1|A|U|2384
6GWT|1|A|C|2385
6GWT|1|A|A|2386
6GWT|1|A|U|2387
6GWT|1|A|A|2388
6GWT|1|A|G|2389
6GWT|1|A|U|2390
6GWT|1|A|G|2391
6GWT|1|A|A|2392
6GWT|1|A|U|2393
6GWT|1|A|C|2394
6GWT|1|A|C|2395
*
6GWT|1|A|G|2421
6GWT|1|A|C|2422
6GWT|1|A|U|2423
6GWT|1|A|C|2424
6GWT|1|A|A|2425
6GWT|1|A|A|2426
6GWT|1|A|C|2427
6GWT|1|A|G|2428
6GWT|1|A|G|2429
6GWT|1|A|A|2430
6GWT|1|A|U|2431
6GWT|1|A|A|2432
6GWT|1|A|A|2433
6GWT|1|A|A|2434
6GWT|1|A|A|2435

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain C
50S ribosomal protein L2
Chain L
50S ribosomal protein L15
Chain W
50S ribosomal protein L27
Chain X
50S ribosomal protein L28
Chain x
Transfer RNA; tRNA

Coloring options:

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