J6_6GXO_001

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

6GXO|1|A|A|223, 6GXO|1|A|C|264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXO|1|A|G|45
6GXO|1|A|G|46
*
6GXO|1|A|C|179
6GXO|1|A|G|180
6GXO|1|A|A|181
6GXO|1|A|A|182
6GXO|1|A|C|183
*
6GXO|1|A|G|214
6GXO|1|A|G|215
6GXO|1|A|A|216
6GXO|1|A|A|217
6GXO|1|A|A|218
6GXO|1|A|A|219
6GXO|1|A|G|220
6GXO|1|A|A|221
6GXO|1|A|A|222
6GXO|1|A|A|223
6GXO|1|A|U|224
6GXO|1|A|C|225
*
6GXO|1|A|G|230
6GXO|1|A|A|231
6GXO|1|A|G|232
6GXO|1|A|A|233
6GXO|1|A|U|234
6GXO|1|A|U|235
*
6GXO|1|A|A|262
6GXO|1|A|G|263
6GXO|1|A|C|264
6GXO|1|A|A|265
6GXO|1|A|G|266
*
6GXO|1|A|C|426
6GXO|1|A|U|427
6GXO|1|A|A|428
6GXO|1|A|A|429
6GXO|1|A|A|430
6GXO|1|A|U|431
6GXO|1|A|A|432
6GXO|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34