J6_6GXP_001

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

6GXP|1|A|A|223, 6GXP|1|A|C|264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXP|1|A|G|45
6GXP|1|A|G|46
*
6GXP|1|A|C|179
6GXP|1|A|G|180
6GXP|1|A|A|181
6GXP|1|A|A|182
6GXP|1|A|C|183
*
6GXP|1|A|G|214
6GXP|1|A|G|215
6GXP|1|A|A|216
6GXP|1|A|A|217
6GXP|1|A|A|218
6GXP|1|A|A|219
6GXP|1|A|G|220
6GXP|1|A|A|221
6GXP|1|A|A|222
6GXP|1|A|A|223
6GXP|1|A|U|224
6GXP|1|A|C|225
*
6GXP|1|A|G|230
6GXP|1|A|A|231
6GXP|1|A|G|232
6GXP|1|A|A|233
6GXP|1|A|U|234
6GXP|1|A|U|235
*
6GXP|1|A|A|262
6GXP|1|A|G|263
6GXP|1|A|C|264
6GXP|1|A|A|265
6GXP|1|A|G|266
*
6GXP|1|A|C|426
6GXP|1|A|U|427
6GXP|1|A|A|428
6GXP|1|A|A|429
6GXP|1|A|A|430
6GXP|1|A|U|431
6GXP|1|A|A|432
6GXP|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34