J6_6GZ3_001
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUC
- Length
- 42 nucleotides
- Bulged bases
- 6GZ3|1|A2|A|66, 6GZ3|1|A2|C|334, 6GZ3|1|A3|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZ3|1|A2|G|21
6GZ3|1|A2|G|22
6GZ3|1|A2|C|23
6GZ3|1|A2|G|24
6GZ3|1|A2|A|25
6GZ3|1|A2|C|26
*
6GZ3|1|A2|G|57
6GZ3|1|A2|G|58
6GZ3|1|A2|A|59
6GZ3|1|A2|A|60
6GZ3|1|A2|A|61
6GZ3|1|A2|A|62
6GZ3|1|A2|G|63
6GZ3|1|A2|A|64
6GZ3|1|A2|A|65
6GZ3|1|A2|A|66
6GZ3|1|A2|C|67
*
6GZ3|1|A2|G|74
6GZ3|1|A2|G|75
6GZ3|1|A2|A|76
6GZ3|1|A2|U|77
6GZ3|1|A2|U|78
*
6GZ3|1|A2|A|105
6GZ3|1|A2|A|106
6GZ3|1|A2|G|107
6GZ3|1|A2|A|108
6GZ3|1|A2|G|109
*
6GZ3|1|A2|C|326
6GZ3|1|A2|U|327
6GZ3|1|A2|A|328
6GZ3|1|A2|A|329
6GZ3|1|A2|A|330
6GZ3|1|A2|U|331
6GZ3|1|A2|A|332
6GZ3|1|A2|C|333
6GZ3|1|A2|C|334
6GZ3|1|A2|G|335
6GZ3|1|A2|G|336
*
6GZ3|1|A3|C|32
6GZ3|1|A3|G|33
6GZ3|1|A3|U|34
6GZ3|1|A3|C|35
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- ribosomal protein uL4
- Chain AL
- ribosomal protein eL13
- Chain AN
- Ribosomal protein L15
- Chain Ah
- ribosomal protein uL29
- Chain Ai
- ribosomal protein eL36
- Chain Aj
- Ribosomal protein L37
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