J6_6GZ3_003
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 6GZ3|1|A2|G|3893, 6GZ3|1|A2|A|4338, 6GZ3|1|A2|A|4340, 6GZ3|1|A2|A|4341, 6GZ3|1|A2|A|4342
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZ3|1|A2|U|3891
6GZ3|1|A2|U|3892
6GZ3|1|A2|G|3893
6GZ3|1|A2|A|3894
*
6GZ3|1|A2|U|4150
6GZ3|1|A2|U|4151
6GZ3|1|A2|U|4152
6GZ3|1|A2|G|4153
*
6GZ3|1|A2|C|4166
6GZ3|1|A2|A|4167
*
6GZ3|1|A2|U|4189
6GZ3|1|A2|G|4190
6GZ3|1|A2|U|4191
6GZ3|1|A2|C|4192
*
6GZ3|1|A2|G|4293
6GZ3|1|A2|C|4294
6GZ3|1|A2|C|4295
6GZ3|1|A2|U|4296
6GZ3|1|A2|C|4297
6GZ3|1|A2|A|4298
6GZ3|1|A2|C|4299
6GZ3|1|A2|G|4300
6GZ3|1|A2|A|4301
6GZ3|1|A2|U|4302
6GZ3|1|A2|C|4303
6GZ3|1|A2|C|4304
*
6GZ3|1|A2|G|4332
6GZ3|1|A2|G|4333
6GZ3|1|A2|U|4334
6GZ3|1|A2|G|4335
6GZ3|1|A2|U|4336
6GZ3|1|A2|C|4337
6GZ3|1|A2|A|4338
6GZ3|1|A2|G|4339
6GZ3|1|A2|A|4340
6GZ3|1|A2|A|4341
6GZ3|1|A2|A|4342
6GZ3|1|A2|A|4343
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- Ribosomal protein L8
- Chain AN
- Ribosomal protein L15
- Chain AQ
- ribosomal protein eL18
- Chain AT
- ribosomal protein eL21
- Chain Aa
- ribosomal protein uL15
- Chain Ab
- ribosomal protein eL29
- Chain Ao
- ribosomal protein eL42
- Chain Bw
- Transfer RNA; tRNA
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