J6_6HHQ_001

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

6HHQ|1|1|A|67, 6HHQ|1|1|U|329, 6HHQ|1|4|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|1|G|22
6HHQ|1|1|A|23
6HHQ|1|1|G|24
6HHQ|1|1|U|25
6HHQ|1|1|A|26
6HHQ|1|1|C|27
*
6HHQ|1|1|G|58
6HHQ|1|1|G|59
6HHQ|1|1|A|60
6HHQ|1|1|A|61
6HHQ|1|1|A|62
6HHQ|1|1|A|63
6HHQ|1|1|G|64
6HHQ|1|1|A|65
6HHQ|1|1|A|66
6HHQ|1|1|A|67
6HHQ|1|1|C|68
*
6HHQ|1|1|G|75
6HHQ|1|1|G|76
6HHQ|1|1|A|77
6HHQ|1|1|U|78
6HHQ|1|1|U|79
*
6HHQ|1|1|A|106
6HHQ|1|1|A|107
6HHQ|1|1|A|108
6HHQ|1|1|A|109
6HHQ|1|1|G|110
*
6HHQ|1|1|C|321
6HHQ|1|1|U|322
6HHQ|1|1|A|323
6HHQ|1|1|A|324
6HHQ|1|1|A|325
6HHQ|1|1|U|326
6HHQ|1|1|A|327
6HHQ|1|1|U|328
6HHQ|1|1|U|329
6HHQ|1|1|G|330
6HHQ|1|1|G|331
*
6HHQ|1|4|C|32
6HHQ|1|4|A|33
6HHQ|1|4|U|34
6HHQ|1|4|C|35

Current chains

Chain 1

25S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L35-A

Chain AJ

60S ribosomal protein L36-A

Chain AK

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L4-A

Chain t

60S ribosomal protein L13-A

Chain v

60S ribosomal protein L15-A