J6_6HHQ_003
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 6HHQ|1|AR|A|67, 6HHQ|1|AR|U|329, 6HHQ|1|AT|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HHQ|1|AR|G|22
6HHQ|1|AR|A|23
6HHQ|1|AR|G|24
6HHQ|1|AR|U|25
6HHQ|1|AR|A|26
6HHQ|1|AR|C|27
*
6HHQ|1|AR|G|58
6HHQ|1|AR|G|59
6HHQ|1|AR|A|60
6HHQ|1|AR|A|61
6HHQ|1|AR|A|62
6HHQ|1|AR|A|63
6HHQ|1|AR|G|64
6HHQ|1|AR|A|65
6HHQ|1|AR|A|66
6HHQ|1|AR|A|67
6HHQ|1|AR|C|68
*
6HHQ|1|AR|G|75
6HHQ|1|AR|G|76
6HHQ|1|AR|A|77
6HHQ|1|AR|U|78
6HHQ|1|AR|U|79
*
6HHQ|1|AR|A|106
6HHQ|1|AR|A|107
6HHQ|1|AR|A|108
6HHQ|1|AR|A|109
6HHQ|1|AR|G|110
*
6HHQ|1|AR|C|321
6HHQ|1|AR|U|322
6HHQ|1|AR|A|323
6HHQ|1|AR|A|324
6HHQ|1|AR|A|325
6HHQ|1|AR|U|326
6HHQ|1|AR|A|327
6HHQ|1|AR|U|328
6HHQ|1|AR|U|329
6HHQ|1|AR|G|330
6HHQ|1|AR|G|331
*
6HHQ|1|AT|C|32
6HHQ|1|AT|A|33
6HHQ|1|AT|U|34
6HHQ|1|AT|C|35
Current chains
- Chain AR
- 25S ribosomal RNA
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L4-A
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DK
- 60S ribosomal protein L36-A
- Chain DL
- 60S ribosomal protein L37-A
Coloring options: