J6_6I7V_001

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUAC*GUUUG*CU*AGCA*UCAUAGUGAUCCG*CGCUCAACGGAUAAAA

Length

45 nucleotides

Bulged bases

6I7V|1|CA|U|2076, 6I7V|1|CA|A|2388, 6I7V|1|CA|U|2390, 6I7V|1|CA|G|2428, 6I7V|1|CA|A|2430, 6I7V|1|CA|U|2431, 6I7V|1|CA|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7V|1|CA|U|2074
6I7V|1|CA|U|2075
6I7V|1|CA|U|2076
6I7V|1|CA|A|2077
6I7V|1|CA|C|2078
*
6I7V|1|CA|G|2242
6I7V|1|CA|U|2243
6I7V|1|CA|U|2244
6I7V|1|CA|U|2245
6I7V|1|CA|G|2246
*
6I7V|1|CA|C|2258
6I7V|1|CA|U|2259
*
6I7V|1|CA|A|2281
6I7V|1|CA|G|2282
6I7V|1|CA|C|2283
6I7V|1|CA|A|2284
*
6I7V|1|CA|U|2384
6I7V|1|CA|C|2385
6I7V|1|CA|A|2386
6I7V|1|CA|U|2387
6I7V|1|CA|A|2388
6I7V|1|CA|G|2389
6I7V|1|CA|U|2390
6I7V|1|CA|G|2391
6I7V|1|CA|A|2392
6I7V|1|CA|U|2393
6I7V|1|CA|C|2394
6I7V|1|CA|C|2395
6I7V|1|CA|G|2396
*
6I7V|1|CA|C|2420
6I7V|1|CA|G|2421
6I7V|1|CA|C|2422
6I7V|1|CA|U|2423
6I7V|1|CA|C|2424
6I7V|1|CA|A|2425
6I7V|1|CA|A|2426
6I7V|1|CA|C|2427
6I7V|1|CA|G|2428
6I7V|1|CA|G|2429
6I7V|1|CA|A|2430
6I7V|1|CA|U|2431
6I7V|1|CA|A|2432
6I7V|1|CA|A|2433
6I7V|1|CA|A|2434
6I7V|1|CA|A|2435

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain C2

50S ribosomal protein L33

Chain C4

50S ribosomal protein L35

Chain CC

50S ribosomal protein L2

Chain CM

50S ribosomal protein L15

Chain CX

50S ribosomal protein L27

Chain CY

50S ribosomal protein L28