J6_6LQM_003
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 6LQM|1|2|G|3922, 6LQM|1|2|C|4337, 6LQM|1|2|A|4376, 6LQM|1|2|A|4378, 6LQM|1|2|A|4379
- QA status
- Modified nucleotides: 5MC, OMG, MHG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LQM|1|2|U|3920
6LQM|1|2|U|3921
6LQM|1|2|G|3922
6LQM|1|2|A|3923
*
6LQM|1|2|U|4188
6LQM|1|2|U|4189
6LQM|1|2|U|4190
6LQM|1|2|G|4191
*
6LQM|1|2|C|4204
6LQM|1|2|A|4205
*
6LQM|1|2|U|4227
6LQM|1|2|G|4228
6LQM|1|2|U|4229
6LQM|1|2|C|4230
*
6LQM|1|2|G|4331
6LQM|1|2|C|4332
6LQM|1|2|C|4333
6LQM|1|2|U|4334
6LQM|1|2|5MC|4335
6LQM|1|2|A|4336
6LQM|1|2|C|4337
6LQM|1|2|G|4338
6LQM|1|2|A|4339
6LQM|1|2|U|4340
6LQM|1|2|C|4341
6LQM|1|2|C|4342
*
6LQM|1|2|OMG|4370
6LQM|1|2|MHG|4371
6LQM|1|2|U|4372
6LQM|1|2|G|4373
6LQM|1|2|U|4374
6LQM|1|2|C|4375
6LQM|1|2|A|4376
6LQM|1|2|G|4377
6LQM|1|2|A|4378
6LQM|1|2|A|4379
6LQM|1|2|A|4380
6LQM|1|2|A|4381
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 3
- 60S ribosomal export protein NMD3
- Chain L
- 60S ribosomal protein L27a
- Chain U
- 60S ribosomal protein L15
- Chain W
- 60S ribosomal protein L36a
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
- Chain m
- 60S ribosomal protein L8
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