J6_6LSS_002
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 6LSS|1|2|C|1501, 6LSS|1|2|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LSS|1|2|C|1352
6LSS|1|2|G|1353
6LSS|1|2|A|1354
6LSS|1|2|G|1355
*
6LSS|1|2|C|1384
6LSS|1|2|G|1385
6LSS|1|2|C|1386
6LSS|1|2|A|1387
6LSS|1|2|A|1388
*
6LSS|1|2|U|1395
6LSS|1|2|G|1396
6LSS|1|2|A|1397
6LSS|1|2|A|1398
6LSS|1|2|G|1399
*
6LSS|1|2|C|1418
6LSS|1|2|G|1419
6LSS|1|2|A|1420
6LSS|1|2|G|1421
*
6LSS|1|2|C|1464
6LSS|1|2|G|1465
6LSS|1|2|G|1466
*
6LSS|1|2|C|1499
6LSS|1|2|A|1500
6LSS|1|2|C|1501
6LSS|1|2|G|1502
6LSS|1|2|A|1503
6LSS|1|2|G|1504
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L29
- Chain D
- 60S ribosomal protein L4
- Chain K
- 60S ribosomal protein L36
- Chain L
- 60S ribosomal protein L27a
- Chain Q
- 60S ribosomal protein L13
- Chain Z
- 60S ribosomal protein L18
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