J6_6LSS_003

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCU(5MC)ACGAUCC*(OMG)(MHG)UGUCAGAAAA

Length

38 nucleotides

Bulged bases

6LSS|1|2|G|3922, 6LSS|1|2|A|4376, 6LSS|1|2|A|4378, 6LSS|1|2|A|4379

QA status

Modified nucleotides: 5MC, OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|U|3920
6LSS|1|2|U|3921
6LSS|1|2|G|3922
6LSS|1|2|A|3923
*
6LSS|1|2|U|4188
6LSS|1|2|U|4189
6LSS|1|2|U|4190
6LSS|1|2|G|4191
*
6LSS|1|2|C|4204
6LSS|1|2|A|4205
*
6LSS|1|2|U|4227
6LSS|1|2|G|4228
6LSS|1|2|U|4229
6LSS|1|2|C|4230
*
6LSS|1|2|G|4331
6LSS|1|2|C|4332
6LSS|1|2|C|4333
6LSS|1|2|U|4334
6LSS|1|2|5MC|4335
6LSS|1|2|A|4336
6LSS|1|2|C|4337
6LSS|1|2|G|4338
6LSS|1|2|A|4339
6LSS|1|2|U|4340
6LSS|1|2|C|4341
6LSS|1|2|C|4342
*
6LSS|1|2|OMG|4370
6LSS|1|2|MHG|4371
6LSS|1|2|U|4372
6LSS|1|2|G|4373
6LSS|1|2|U|4374
6LSS|1|2|C|4375
6LSS|1|2|A|4376
6LSS|1|2|G|4377
6LSS|1|2|A|4378
6LSS|1|2|A|4379
6LSS|1|2|A|4380
6LSS|1|2|A|4381

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain U

60S ribosomal protein L15

Chain W

60S ribosomal protein L36a

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain m

60S ribosomal protein L8