J6_6N8O_001
3D structure
- PDB id
- 6N8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 6N8O|1|A|A|67, 6N8O|1|A|U|329, 6N8O|1|C|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8O|1|A|G|22
6N8O|1|A|A|23
6N8O|1|A|G|24
6N8O|1|A|U|25
6N8O|1|A|A|26
6N8O|1|A|C|27
*
6N8O|1|A|G|58
6N8O|1|A|G|59
6N8O|1|A|A|60
6N8O|1|A|A|61
6N8O|1|A|A|62
6N8O|1|A|A|63
6N8O|1|A|G|64
6N8O|1|A|A|65
6N8O|1|A|A|66
6N8O|1|A|A|67
6N8O|1|A|C|68
*
6N8O|1|A|G|75
6N8O|1|A|G|76
6N8O|1|A|A|77
6N8O|1|A|U|78
6N8O|1|A|U|79
*
6N8O|1|A|A|106
6N8O|1|A|A|107
6N8O|1|A|A|108
6N8O|1|A|A|109
6N8O|1|A|G|110
*
6N8O|1|A|C|321
6N8O|1|A|U|322
6N8O|1|A|A|323
6N8O|1|A|A|324
6N8O|1|A|A|325
6N8O|1|A|U|326
6N8O|1|A|A|327
6N8O|1|A|U|328
6N8O|1|A|U|329
6N8O|1|A|G|330
6N8O|1|A|G|331
*
6N8O|1|C|C|32
6N8O|1|C|A|33
6N8O|1|C|U|34
6N8O|1|C|C|35
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L15-A
- Chain u
- 60S ribosomal protein L35-A
- Chain v
- 60S ribosomal protein L36-A
- Chain w
- 60S ribosomal protein L37-A
Coloring options: